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Publications information icon

Protein-protein interactions improve multiple transcription factor binding site prediction

Laurila, Kirsti; Pukkila, Heidi; Yli-Harja, Olli; Lähdesmäki, Harri
-2009Publications information icon

Human transcription factor protein interaction networks

Peer-reviewed
Open access
DOI
10.1038/s41467-022-28341-5
Göös, Helka; Kinnunen, Matias; Salokas, Kari; Tan, Zenglai; Liu, Xiaonan; Yadav, Leena; Zhang, Qin; ...
Nature communications2022Publications information icon

Disentangling transcription factor binding site complexity

Peer-reviewed
Open access
DOI
10.1093/nar/gky683
Eggeling, Ralf
Nucleic Acids Research2018Publications information icon

Modeling binding specificities of transcription factor pairs with random forests

Peer-reviewed
Open access
DOI
10.1186/s12859-022-04734-7
Antikainen, Anni A.; Heinonen, Markus; Lähdesmäki, Harri
Bmc bioinformatics2022Publications information icon

Associative Clustering to Find Dependencies Between Expression Profiles and Transcription Factor Binding

Nikkilä, Janne; Roos, C.; Sinkkonen, Janne; Kaski, S.
-2003Publications information icon

Integration of Transcription Factor Binding and Gene Expression by Associative Custering

Peer-reviewed
Nikkilä, J.; Roos, C.; Kaski, S.
-2005Publications information icon

Role of Circadian Transcription Factor Rev-Erb in Metabolism and Tissue Fibrosis

Peer-reviewed
Open access
DOI
10.3390/ijms232112954
Raza, Ghulam Shere; Sodum, Nalini; Kaya, Yagmur; Herzig, Karl-Heinz
International journal of molecular sciences2022Publications information icon

Nuclear Factor I Family Members are Key Transcription Factors Regulating Gene Expression

Peer-reviewed
Open access
DOI
10.1016/j.mcpro.2024.100890
Malaymar Pinar, Dicle; Göös, Helka; Tan, Zenglai; Kumpula, Esa-Pekka; Chowdhury, Iftekhar; Wang, Zix...
Molecular and cellular proteomics2025Publications information icon

Transcription factor 7-like 2 (TCF7L2)

Peer-reviewed
DOI
10.1007/978-3-319-01574-3_14
Grant, Struan F. A.; Groop, L.
Springer2016Publications information icon

A long hypoxia-inducible factor 3 isoform 2 is a transcription activator that regulates erythropoietin

Peer-reviewed
Open access
DOI
10.1007/s00018-019-03387-9
Tolonen, Jussi-Pekka; Heikkilä, Minna; Malinen, Marjo; Lee, Hang-Mao; Palvimo, Jorma J.; Wei, Gong-H...
Cellular and molecular life sciences2019

Protein-protein interactions improve multiple transcription factor binding site prediction

2009

Human transcription factor protein interaction networks

Peer-reviewed
Open access
DOI
10.1038/s41467-022-28341-5
2022

Disentangling transcription factor binding site complexity

Peer-reviewed
Open access
DOI
10.1093/nar/gky683
2018

Modeling binding specificities of transcription factor pairs with random forests

Peer-reviewed
Open access
DOI
10.1186/s12859-022-04734-7
2022

Associative Clustering to Find Dependencies Between Expression Profiles and Transcription Factor Binding

2003

Integration of Transcription Factor Binding and Gene Expression by Associative Custering

Peer-reviewed
2005

Role of Circadian Transcription Factor Rev-Erb in Metabolism and Tissue Fibrosis

Peer-reviewed
Open access
DOI
10.3390/ijms232112954
2022

Nuclear Factor I Family Members are Key Transcription Factors Regulating Gene Expression

Peer-reviewed
Open access
DOI
10.1016/j.mcpro.2024.100890
2025

Transcription factor 7-like 2 (TCF7L2)

Peer-reviewed
DOI
10.1007/978-3-319-01574-3_14
2016

A long hypoxia-inducible factor 3 isoform 2 is a transcription activator that regulates erythropoietin

Peer-reviewed
Open access
DOI
10.1007/s00018-019-03387-9
2019